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Bioinformatics Analysis on Posit Connect Cloud with freeCount
The easiest way to use the freeCount R Shiny applications online is through Posit Connect Cloud, which is an online platform that simplifies the deployment of data applications and documents.
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Set Operations with freeCount
In general, set operations are very useful for comparing lists of things. These lists can contain any strings, such as gene or species names. Set operations are also a good way to identify unique or shared genes across sets of analysis results. The freeCount SO app will help you perform set operations with gene lists,…
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Functional Analysis of Networks with freeCount
Functional analysis is useful for determining the functions of a set of interesting genes. These gene sets can be lists of genes produced from different analysis, including weighted gene co-expression network analysis (WGCNA). The freeCount FA app will help you perform functional analysis of gene sets, which can be produced from differential expression (DE) or…
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Network Analysis with freeCount
Weighted gene co-expression network analysis (WGCNA) is used to investigate the function of genes at the system-level. In a network analysis genes with similar patterns of expression are grouped together into modules. The sets of genes in these modules are co-expressed as a result of shared biological functions, pathways, tissues, traits, etc. The freeCount NA…
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Functional Analysis with freeCount
Functional analysis is useful for determining the functions of differentially expressed genes. Genes can have multiple functional annotations, so we need to determine which ones are important. The freeCount FA app will help you perform functional analysis of gene sets, which can be produced from differential expression or network analysis.
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Differential Expression Analysis with freeCount
Differential expression (DE) analysis is used to identify genes driving the patterns of variation associated with groups of samples. It is easy to make curated lists of DE genes using the freeCount DA app.
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freeCount Bioinformatics Analysis Apps on Posit Cloud
One way that you can use the freeCount R Shiny applications (apps) online is through Posit Cloud, which lets you access powerful data science tools in your browser without the need for installation or complex configuration.
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GitHub Version Control Quick Start Guide
When working on a computational project it can be very helpful to keep track of changes that are made by using a developer platform like GitHub. After completing this tutorial you will know how to download a GitHub code repository, modify git files for a repository, create your own repository, and make changes to your…
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